G4DNAUpdateSystemModel.cc

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#include "G4DNAUpdateSystemModel.hh"
#include "G4Molecule.hh"
#include "G4DNAMolecularReactionTable.hh"
#include "G4UnitsTable.hh"
#include "G4MoleculeCounter.hh"
#include "G4DNAScavengerMaterial.hh"
#include "G4Scheduler.hh"
 
#include "G4MoleculeCounterManager.hh"
 
G4DNAUpdateSystemModel::G4DNAUpdateSystemModel() = default;
 
void G4DNAUpdateSystemModel::SetMesh(G4DNAMesh* pMesh) { fpMesh = pMesh; }
void G4DNAUpdateSystemModel::KillMolecule(const Index& index, MolType type)
{
  // kill normal molecule
  auto& node = fpMesh->GetVoxelMapList(index);
  auto iter  = node.find(type);
  if(iter != node.end())
  {
    if(iter->second <= 0)
    {
      G4ExceptionDescription exceptionDescription;
      exceptionDescription
        << "G4DNAUpdateSystemModel::KillMolecule::molecule : "
        << type->GetName() << " index : " << index
        << " number : " << iter->second << G4endl;
      G4Exception("G4DNAEventScheduler::Stepping", "G4DNAEventScheduler002",
                  FatalErrorInArgument, exceptionDescription);
    }
    iter->second--;
    if (G4MoleculeCounterManager::Instance()->GetIsActive())
    {
          G4MoleculeCounterManager::Instance()->RemoveMoleculeWithoutTrack(type, fGlobalTime);
    }
  }
  else
  {
    auto pScavengerMaterial = dynamic_cast<G4DNAScavengerMaterial*>(
      G4Scheduler::Instance()->GetScavengerMaterial());
    if(pScavengerMaterial != nullptr)
    {
      pScavengerMaterial->ReduceNumberMoleculePerVolumeUnitForMaterialConf(
        type, fGlobalTime);
    }
    else
    {
      G4ExceptionDescription exceptionDescription;
      exceptionDescription
        << "index : " << index << " " << type->GetName()
        << "  This molecule is not belong scavengers or particle-base"
        << G4endl;
      G4Exception("G4DNAEventScheduler::Stepping", "G4DNAEventScheduler002",
                  FatalErrorInArgument, exceptionDescription);
    }
  }
}
 
void G4DNAUpdateSystemModel::JumpTo(const Index& index, MolType type)
{
  auto& node = fpMesh->GetVoxelMapList(index);
  auto iter  = node.find(type);
  if(iter != node.end())
  {
    if(iter->second <= 0)
    {
      G4ExceptionDescription exceptionDescription;
      exceptionDescription << "G4DNAUpdateSystemModel::JumpTo::molecule : "
                           << type->GetName() << " index : " << index
                           << " number : " << iter->second;
      G4Exception("G4DNAUpdateSystemModel::JumpTo", "G4DNAUpdateSystemModel001",
                  FatalErrorInArgument, exceptionDescription);
    }
    iter->second--;
  }
  else
  {
    fpMesh->PrintVoxel(index);
    G4ExceptionDescription exceptionDescription;
    exceptionDescription << "index : " << index << " " << type->GetName()
                         << " There is no this type";
    G4Exception("G4DNAUpdateSystemModel::JumpTo", "G4DNAUpdateSystemModel002",
                FatalErrorInArgument, exceptionDescription);
  }
}
 
void G4DNAUpdateSystemModel::CreateMolecule(const Index& index, MolType type)
{
  // for scavenger
  auto pScavengerMaterial = dynamic_cast<G4DNAScavengerMaterial*>(
    G4Scheduler::Instance()->GetScavengerMaterial());
  if(pScavengerMaterial != nullptr && pScavengerMaterial->find(type))
  {
    pScavengerMaterial->AddNumberMoleculePerVolumeUnitForMaterialConf(
      type, fGlobalTime);
    return;
  }
  // for molecule
  auto& node = fpMesh->GetVoxelMapList(index);
  auto iter  = node.find(type);
  if(iter != node.end())
  {
    iter->second++;
  }
  else
  {
    node[type] = 1;
  }
 
  if (G4MoleculeCounterManager::Instance()->GetIsActive())
  {
      G4MoleculeCounterManager::Instance()->AddMoleculeWithoutTrack(type, fGlobalTime);
  }
}
 
void G4DNAUpdateSystemModel::JumpIn(const Index& index, MolType type)
{
  // for molecule
  auto& node = fpMesh->GetVoxelMapList(index);
  auto iter  = node.find(type);
  if(iter != node.end())
  {
    iter->second++;
  }
  else
  {
    node[type] = 1;
  }
}
 
void G4DNAUpdateSystemModel::UpdateSystem(const Index& index,
                                          const ReactionData& data)
{
  auto reactant1 = data.GetReactant1();
  auto reactant2 = data.GetReactant2();
#ifdef G4VERBOSE
  if(fVerbose != 0)
  {
    G4cout << "At time : " << std::setw(7) << G4BestUnit(fGlobalTime, "Time")
           << " Reaction : " << reactant1->GetName() << " + "
           << reactant2->GetName() << " -> ";
  }
#endif
  const G4int nbProducts = data.GetNbProducts();
  if(nbProducts != 0)
  {
    for(G4int j = 0; j < nbProducts; ++j)
    {
#ifdef G4VERBOSE
      if((fVerbose != 0) && j != 0)
      {
        G4cout << " + ";
      }
      if(fVerbose != 0)
      {
        G4cout << data.GetProduct(j)->GetName();
      }
#endif
      CreateMolecule(index, data.GetProduct(j));
    }
  }
  else
  {
#ifdef G4VERBOSE
    if(fVerbose != 0)
    {
      G4cout << "No product";
    }
#endif
  }
#ifdef G4VERBOSE
  if(fVerbose != 0)
  {
    G4cout << G4endl;
  }
#endif
  KillMolecule(index, reactant1);
  KillMolecule(index, reactant2);
}
 
void G4DNAUpdateSystemModel::UpdateSystem(const Index& index,
                                          const JumpingData& data)
{
  auto reactant    = std::get<0>(data);
  auto JunpToIndex = std::get<1>(data);
#ifdef G4VERBOSE
  if(fVerbose > 1)
  {
    G4cout << "At time : " << std::setw(7) << G4BestUnit(fGlobalTime, "Time")
           << " Jumping : " << reactant->GetName() << " from " << index
           << " -> " << JunpToIndex << G4endl;
  }
#endif
  JumpTo(index, reactant);
  JumpIn(JunpToIndex, reactant);
}